rs29711001 SNP Detail

Summary

• ID
  rs29711001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50481163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTGTCT GCGGAGCTCA
  GTGCCTGCGG AGCTCTCTTG GGTCTGTGCA CACTCCAGCT AGCAGCTGAG CACCTGGATT
  CAGTCTGAGC TTTCCTGCTT AGAATTTATA TAAACTTGAG CATAATTCCT GGCTTTGTTT
  TTATTATCCG AAAGGAAAGA ACCAGGCCTA AATTTAGATT TCTGCAAAGG GGCTTTTGTA
  Y
  TAATGAAACA GCTCATAAAA TGGCTGGCAT TACGTGCCCT CCAACAAGGG AGAAATCTGA
  TGGCAATTCT TTCTTTTTAA GTGATTTATT TATTTTTACT CTATGTGCAT TGGTGTTTTG
  CCTGCATGTG TGTCTGTGTG AGGCGTTTGT ATCCCATTGA ACTGGTGTTA TAGATGGTTG
  TGAGTTGCCA AGTGGCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
ss47872918	NES11684116	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
rs29711001					SNP	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47872918	NES11684116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50481163 () rs orientation: forward

Symbol	Name	Function Class
Gm40372	predicted gene, 40372	within coordinates
Rr630019	regulatory region 630019	601 bp proximal
Tssr60917	transcription start site region 60917	1538 bp downstream