rs29710712 SNP Detail

Summary

• ID
  rs29710712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CACACTTGTT CCGCCCGTCC GCGGCCCGAC GTGCGGTAGC GCCGTCTGCT GCGCCGTGAC
  GTAACCGCAC CTCATTGGCT CCAGGACAGG TTTGTGCGCG CGCATGCGAG CTAGCATGGT
  AGGATGTGCC CAGAGGGCGC CCTTCCTTCA GAGGCCTCGT TTGCCCGACA CTTACGACAG
  GCCTTAGGAC GTAAGGCGTG GACGTGCGTG ACGTCACCCT CTGGCCTGCG AGATGGCGAG
  GGCAAGTAGC GGGGCCGATG CTCCCTTGGG ATCCGGGTGT GGCTCGGCTC AGGTAACGCC
  Y
  GGCCCTAGGA CTCCTTCGGC CTCCGCCCAC GGGGAGTGCT GAGACTGCCG GCCGGTGTGC
  TGGCGACCTT TACCCAGGCT TGGTCAAGGC TTCCTGGCTG GCGCAACTGC ACTGGCCTCG
  CAGTGGACGC CTGCTGGTGA CCTTTACTCT GTTAAACCAT CTTCCTGCTC TCCCAGTGAG
  AGCCTCAAAG CTGGGGAAGG TACGCACAAG TGGCAGACAG GATCACATCT TACCCAGAGT
  CCCTGTTTTC TTCCCCTAGT GTTTGTAGAA AACGAGGAGG GTGTGCAGGC AAGCTTTAAG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45867844	mCV24540063	ABI	CRAMUS_MOUSE	f	SNP	T	C					C	C
ss47873382	NES11680603	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	C	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29710712					SNP	T	C	C	C	C	C	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873382	NES11680603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543803 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	285 bp upstream
Rr630033	regulatory region 630033	296 bp distal
Rr630034	regulatory region 630034	61 bp distal
Rr630035	regulatory region 630035	244 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	246 bp proximal
Tssr56423	transcription start site region 56423	73 bp downstream
Tssr60918	transcription start site region 60918	265 bp upstream
Tssr60919	transcription start site region 60919	246 bp upstream