rs29710710 SNP Detail

Summary

• ID
  rs29710710
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGTAACCG CACCTCATTG
  GCTCCAGGAC AGGTTTGTGC GCGCGCATGC GAGCTAGCAT GGTAGGATGT GCCCAGAGGG
  CGCCCTTCCT TCAGAGGCCT CGTTTGCCCG ACACTTACGA CAGGCCTTAG GACGTAAGGC
  GTGGACGTGC GTGACGTCAC CCTCTGGCCT GCGAGATGGC GAGGGCAAGT AGCGGGGCCG
  W
  TGCTCCCTTG GGATCCGGGT GTGGCTCGGC TCAGGTAACG CCCGGCCCTA GGACTCCTTC
  GGCCTCCGCC CACGGGGAGT GCTGAGACTG CCGGCCGGTG TGCTGGCGAC CTTTACCCAG
  GCTTGGTCAA GGCTTCCTGG CTGGCGCAAC TGCACTGGCC TCGCAGTGGA CGCCTGCTGG
  TGACCTTTAC TCTGTTAAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss45889747	mCV24539801	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss47873380	NES11680602	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A		T	A	A	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29710710					SNP	T	T	A	A	A	T	A	A	T	A	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873380	NES11680602	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543760 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	within coordinates
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	242 bp upstream
Rr630033	regulatory region 630033	253 bp distal
Rr630034	regulatory region 630034	18 bp distal
Rr630035	regulatory region 630035	201 bp distal
Rr630036	regulatory region 630036	within coordinates
Rr630037	regulatory region 630037	289 bp proximal
Tssr56423	transcription start site region 56423	30 bp downstream
Tssr60918	transcription start site region 60918	222 bp upstream
Tssr60919	transcription start site region 60919	203 bp upstream