rs29709973 SNP Detail

Summary

• ID
  rs29709973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50480676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAC AATAAAAGGT CAAAGAAACT
  R
  GTTACGGAAA CTTATCCTTG GTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
ss45896335	mCV22332674	ABI	CRAMUS_MOUSE	f	SNP	A	A	G		A	G
ss47872910	NES11684109	PERLEGEN	MM_PANEL2	f	SNP			G	G		G	G		A
ss133181558	ENSMUSSNP6669884	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			G
ss321798292	CHEV_6_50453695	CHEVERUD	SCREENING_POP	f	SNP								G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J
rs29709973					SNP	A	A	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47872910	NES11684109	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50480676 () rs orientation: forward

Symbol	Name	Function Class
Gm40372	predicted gene, 40372	within coordinates
Rr630019	regulatory region 630019	1088 bp proximal