rs29709971 SNP Detail

Summary

• ID
  rs29709971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50480650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTGAAG TCAGTGCCTC
  CTGTTTTCTG CTTCAATTTT CTTTAAGATA GTCTTTCTCA ATAGCCCAAA CAAACCTTGA
  ACTCTCCTTC CTCCCCATCC TGAGTGGAGG GATTACAAGT GTATATCACC ATCCCCAGCT
  GTTTAATTGC TTTTTAAAAT TGTCAGATAT GCACTGTTGA CACATTATTT ACCAAAAAGT
  R
  ATAACAATAA AAGGTCAAAG AAACTAGTTA CGGAAACTTA TCCTTGGTGT TCAAAGACTT
  TGAAAAACCT GCACTTTTTG TGTACCAAAT GTTTTCCCAA CTGCTGGGAA GAGAGACTGC
  TAAGACTATT AGCATGCCCC AACTGAATGA TGAGACAGAA AGTGGGCAGA GGGAACCGTA
  ATAACGAAGG TGGATAACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
ss47872908	NES11684107	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ
rs29709971					SNP	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47872908	NES11684107	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50480650 () rs orientation: forward

Symbol	Name	Function Class
Gm40372	predicted gene, 40372	within coordinates
Rr630019	regulatory region 630019	1114 bp proximal