rs29709732 SNP Detail

Summary

• ID
  rs29709732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCGGTCC TACACCCACG
  CCGCCTCCAG CCGTGCCACA GTTCTGCATG GCTTTGTAGG TTAGGCCTGC CCCGGCCTCC
  TCGCCCCGTT CCCGGTCCGC ATCCCCGTCG CGCGCTCACC GTTCCGGGCT GGTCAACACC
  ACGAACGTTC GGACTCGAAG ACAGACGTCC CGCGCTCTAG CCCAAGGACA CGCCGGCCCG
  Y
  GCCTATGTAC CGGTGTCGGT GCAACCACAC TTGTTCCGCC CGTCCGCGGC CCGACGTGCG
  GTAGCGCCGT CTGCTGCGCC GTGACGTAAC CGCACCTCAT TGGCTCCAGG ACAGGTTTGT
  GCGCGCGCAT GCGAGCTAGC ATGGTAGGAT GTGCCCAGAG GGCGCCCTTC CTTCAGAGGC
  CTCGTTTGCC CGACACTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873372	NES11680597	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29709732					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873372	NES11680597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543477 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	146 bp upstream
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	mRNA-UTR
Rr630033	regulatory region 630033	within coordinates
Rr630034	regulatory region 630034	31 bp proximal
Rr630035	regulatory region 630035	61 bp proximal
Rr630036	regulatory region 630036	266 bp proximal
Rr630037	regulatory region 630037	572 bp proximal
Tssr56423	transcription start site region 56423	223 bp upstream
Tssr60918	transcription start site region 60918	38 bp downstream
Tssr60919	transcription start site region 60919	66 bp downstream