rs29709730 SNP Detail

Summary

• ID
  rs29709730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50543276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTAGTC CGGCACGGGA
  AGGCGAGGGA GGACTGGGGA AGGAACCGTC TCACTCTCAC GTTGAGATCC CAGGGGTGAC
  TACGACTTTA CAAACCCACC CTCCCAGATG CTTAATCAGG AAAAGAACTG GCCCAGTCCT
  GAAGGAACAG CAGCTTCTGC TCTCAGAAGG GGCGGCGGGC GAGTTCCTTC TAGAACTCCG
  R
  GCCCCGGTCC TACACCCACG CCGCCTCCAG CCGTGCCACA GTTCTGCATG GCTTTGTAGG
  TTAGGCCTGC CCCGGCCTCC TCGCCCCGTT CCCGGTCCGC ATCCCCGTCG CGCGCTCACC
  GTTCCGGGCT GGTCAACACC ACGAACGTTC GGACTCGAAG ACAGACGTCC CGCGCTCTAG
  CCCAAGGACA CGCCGGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss45950155	mCV24539790	ABI	CRAMUS_MOUSE	f	SNP		A	G					G	G
ss47873370	NES11680595	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G		G	G	G	A	G	G
ss133182250	ENSMUSSNP3935133	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs29709730					SNP	A	A	G	G	G	A	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873370	NES11680595	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50543276 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	347 bp upstream
Cpgi17392	CpG island 17392	within coordinates
Cycs	cytochrome c, somatic	Intron
Rr630033	regulatory region 630033	within coordinates
Rr630034	regulatory region 630034	232 bp proximal
Rr630035	regulatory region 630035	262 bp proximal
Rr630036	regulatory region 630036	467 bp proximal
Rr630037	regulatory region 630037	773 bp proximal
Tssr56423	transcription start site region 56423	424 bp upstream
Tssr60918	transcription start site region 60918	239 bp downstream
Tssr60919	transcription start site region 60919	267 bp downstream