rs29709728 SNP Detail

Summary

• ID
  rs29709728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50542831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACCCAT TTTTAATTCT
  AAAAGGGAAA AGATCCAACA GTAAAACGTA CTACGGATCC CAATGACCAT TCAAACCGCT
  ATTCTTATGT CCTCTTAACA CCAGGCAGGG TGCTAACTCA GTCCACTTGC AATATTCTTC
  AATAGCAAAT ACATCACCTA GGAGACTCTC CTTTAAAGCA AGTCTGTGCT CAAGACAGGT
  Y
  CATGCCAAGG GAAATGGAAA CCCACAGCTC AAACCCCAGT TTCCGAAGAA GGCAAGGTCA
  AAAAGTCACA AATATGAAAC CGGACTCATT AAAGCAAAAC CACTACAACT CTTAACATTT
  CAGAATGCTA AACTGCTGTC AGTGCTGCCG ATTAAAGTCA CTTCCAAAGA TAAGGGAGGC
  TGGGGGTGAT CCTAAGTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873368	NES11680592	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29709728					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873368	NES11680592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50542831 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	792 bp upstream
Cpgi17392	CpG island 17392	174 bp proximal
Cycs	cytochrome c, somatic	Intron
Rr630033	regulatory region 630033	within coordinates
Rr630034	regulatory region 630034	677 bp proximal
Rr630035	regulatory region 630035	707 bp proximal
Rr630036	regulatory region 630036	912 bp proximal
Rr630037	regulatory region 630037	1218 bp proximal
Tssr56423	transcription start site region 56423	869 bp upstream
Tssr60918	transcription start site region 60918	684 bp downstream
Tssr60919	transcription start site region 60919	712 bp downstream