rs29709726 SNP Detail

Summary

• ID
  rs29709726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50542773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACGTACT ACGGATCCCA ATGACCATTC AAACCGCTAT
  TCTTATGTCC TCTTAACACC AGGCAGGGTG CTAACTCAGT CCACTTGCAA TATTCTTCAA
  Y
  AGCAAATACA TCACCTAGGA GACTCTCCTT TAAAGCAAGT CTGTGCTCAA GACAGGTCCA
  TGCCAAGGGA AATGGAAACC CACAGCTCAA ACCCCAGTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47873366	NES11680589	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29709726					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873366	NES11680589	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50542773 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	850 bp upstream
Cpgi17392	CpG island 17392	232 bp proximal
Cycs	cytochrome c, somatic	Intron
Rr630033	regulatory region 630033	within coordinates
Rr630034	regulatory region 630034	735 bp proximal
Rr630035	regulatory region 630035	765 bp proximal
Rr630036	regulatory region 630036	970 bp proximal
Rr630037	regulatory region 630037	1276 bp proximal
Tssr56423	transcription start site region 56423	927 bp upstream
Tssr60918	transcription start site region 60918	742 bp downstream
Tssr60919	transcription start site region 60919	770 bp downstream