rs29708962 SNP Detail

Summary

• ID
  rs29708962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:50542718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCCGC CCGAACAGAC
  CGTGGAGATT TGGTCCAGTC TTATGCTTGC CTCCCTTTTC CACAGTGTGG CACTGGGCAC
  ACTTCTGAAC AAAAATCTTC TTGCCTTTTT CAACATCACC CATTTTTAAT TCTAAAAGGG
  AAAAGATCCA ACAGTAAAAC GTACTACGGA TCCCAATGAC CATTCAAACC GCTATTCTTA
  Y
  GTCCTCTTAA CACCAGGCAG GGTGCTAACT CAGTCCACTT GCAATATTCT TCAATAGCAA
  ATACATCACC TAGGAGACTC TCCTTTAAAG CAAGTCTGTG CTCAAGACAG GTCCATGCCA
  AGGGAAATGG AAACCCACAG CTCAAACCCC AGTTTCCGAA GAAGGCAAGG TCAAAAAGTC
  ACAAATATGA AACCGGACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47873362	NES11680583	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29708962					SNP	C	T	T	T	C	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47873362	NES11680583	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50542718 () rs orientation: forward

Symbol	Name	Function Class
5430402O13Rik	RIKEN cDNA 5430402O13 gene	905 bp upstream
Cycs	cytochrome c, somatic	Intron
Rr630033	regulatory region 630033	14 bp proximal
Rr630034	regulatory region 630034	790 bp proximal
Rr630035	regulatory region 630035	820 bp proximal
Rr630036	regulatory region 630036	1025 bp proximal
Rr630037	regulatory region 630037	1331 bp proximal
Tssr56423	transcription start site region 56423	982 bp upstream
Tssr60918	transcription start site region 60918	797 bp downstream
Tssr60919	transcription start site region 60919	825 bp downstream