rs29682366 SNP Detail

Summary

• ID
  rs29682366
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTA AACTGCAAAT GCTGAGTGCC
  S
  GGCTGGGTCA AAGGAACTAG GAAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45353820	mCV25142678	ABI	CRAMUS_MOUSE	f	SNP	C	G	G
ss146954237	ENSMUSSNP197451	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		G
ss320397649	CHEV_2_94245986	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29682366					SNP	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236174 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	878 bp upstream
Cpgi11962	CpG island 11962	185 bp proximal
Rr561373	regulatory region 561373	within coordinates
Rr561374	regulatory region 561374	303 bp proximal
Rr561375	regulatory region 561375	648 bp proximal
Rr561376	regulatory region 561376	840 bp proximal
Rr561377	regulatory region 561377	873 bp proximal
Rr561378	regulatory region 561378	927 bp proximal
Tssr19003	transcription start site region 19003	890 bp upstream
Tssr19004	transcription start site region 19004	934 bp upstream
Tssr25328	transcription start site region 25328	827 bp upstream
Tssr25329	transcription start site region 25329	818 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron