rs29672013 SNP Detail

Summary

• ID
  rs29672013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156813229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTTCCAG TCCTGACTTC CTTTGTTGAT AAACAGCAAT
  GTGGAAATGT AAGCTGAATA AACCCTTTCC TCCCCAACTT GCTTCTTGGT CATGATGTTT
  R
  TGCAGAAACA GAAACCCTGA CTAAGACAGA CCCTAAATTA GTAATGGCAA GGGCAGTGAA
  AACAAATCAA CAACTCTACT GAGGAATCTC AGTGTAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45350747	mCV22553895	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148088634	ENSMUSSNP3596531	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320583271	CHEV_2_156797045	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29672013					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156813229 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			539 bp distal
Rr568396	regulatory region 568396			1646 bp proximal
Tssr27078	transcription start site region 27078			1016 bp upstream
Tssr27079	transcription start site region 27079			891 bp upstream
Tssr27080	transcription start site region 27080			815 bp upstream
Tssr27081	transcription start site region 27081			789 bp upstream
Tssr27082	transcription start site region 27082			736 bp upstream