rs29671674 SNP Detail

Summary

• ID
  rs29671674
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120809953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA GTTTGGGGCC AGACTAGTTC
  Y
  AGGTCAGCTA GGCTGCATAG CAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45349540	mCV22579229	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147374628	ENSMUSSNP4739827	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				C
ss320480963	CHEV_2_120805208	CHEVERUD	SCREENING_POP	f	SNP				C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29671674					SNP	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120809953 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			1591 bp distal
Gm55820	predicted gene, 55820			1745 bp upstream
Rr397244	regulatory region 397244			594 bp downstream
Rr563754	regulatory region 563754			1929 bp distal
Rr563756	regulatory region 563756			1960 bp distal
Rr563757	regulatory region 563757			701 bp distal
Tmem62	transmembrane protein 62			Intron
				Noncoding-Transcript-Variant