rs29671090 SNP Detail

Summary

• ID
  rs29671090
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156813918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTACTGTC AAGGCATTCT
  GGGTTCCTGA CCCACAGAAA CTATAAAAGA TAATAAATAA TTTTATTTCA AAAGGATATG
  TTCTACAGCA ATAAGTAGCC AGTAAGGAGG ACCACATTGT GGAGTTCAAA GAAAGGAAGG
  TGGCTGAGGG AGATGAGGTA ACTAAGCAGA AAGCCTTCCT TCACCCCAGC GTACAGCCCT
  K
  GATAGGCTGT AAGCACTGGA TACTGCAGCC ACATGGTTCT CCCTCTGTGG AGAAAGCACC
  ACACTTTCTT CCTTCTTTCT TGTCCCTGGA CCTATCAGAG CAGGAAAAAA CCCTAACTCA
  ATGATCTTGA ATTGTGGCCA TTCAACGCCA CTTACTGGAA AGCTCCTGTG CAAAGCACTA
  GGAAAGATCA GAGTGTCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45349050	mCV22553872	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss148088663	ENSMUSSNP2519427	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29671090					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156813918 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			1228 bp distal
Rr568396	regulatory region 568396			957 bp proximal
Tssr27078	transcription start site region 27078			1705 bp upstream
Tssr27079	transcription start site region 27079			1580 bp upstream
Tssr27080	transcription start site region 27080			1504 bp upstream
Tssr27081	transcription start site region 27081			1478 bp upstream
Tssr27082	transcription start site region 27082			1425 bp upstream