rs29645888 SNP Detail

Summary

• ID
  rs29645888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28318337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCGGGCAA CCGTCTCGTG
  CCAAGGCGCG AGACCCGACT GCTCCTTGCT GCAAAAGATT CTCTTGGAGA AGAAAGGCAC
  TGGCCCTTCA CGTTTGCCAG CTACCTGCAA GATGCCATCG TGAGCTAGCT GTCTCTACCA
  GCGGACCCTG CTGCTCCAAT GGAGCAGTAA TTGCTGCTCT GGGCTGGTCT TGTAGGTGCT
  R
  ACTGACTCCC TTCCCGGCTT CTGTCTCCGG TGCTGGGGCT CCGGCTCAGC TCTTCCCTAT
  ATGCCAGTGT GCACTCACCT TTATCTGTGG TTTGAACTCA GCCCTGCCTA TTCCTTCCCT
  CGGTGACTGT GACCTTTCAG TTTTATGGCT GAACTTCAGC AGGTGAAAGA GAAGCTTAAC
  CGCTTCTCCT CACCACACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866507	NES10823232	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29645888					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866507	NES10823232	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28318337 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13025	CpG island 13025			165 bp distal
Gm54170	predicted gene, 54170			within coordinates
Gm56802	predicted gene, 56802			within coordinates
Rr574555	regulatory region 574555			535 bp distal
Rr574556	regulatory region 574556			within coordinates
Rr574557	regulatory region 574557			17 bp proximal
Rr574558	regulatory region 574558			1040 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant
Tssr28643	transcription start site region 28643			974 bp downstream
Tssr28644	transcription start site region 28644			855 bp downstream
Tssr28645	transcription start site region 28645			802 bp downstream
Tssr28646	transcription start site region 28646			775 bp downstream
Tssr28647	transcription start site region 28647			760 bp downstream
Tssr28648	transcription start site region 28648			751 bp downstream
Tssr28649	transcription start site region 28649			611 bp downstream
Tssr32865	transcription start site region 32865			47 bp downstream
Tssr32866	transcription start site region 32866			1042 bp downstream