rs29645779 SNP Detail

Summary

• ID
  rs29645779
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28244326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCAGAG GTTGAAAGAA
  GGCTGCATAA AGACATAAAA AGCCTAATGG AGGACTGAGA CTGATCCCTT TCCATTGTGT
  CCAGGATAGC TGCACCACAG TGTGTGGGAT AAATTACCTG CAAACTAGAT AAAGCACTGT
  CAGGTAGGCC GAGAAGACGT TTCTCCAGGA ATCCATATGC AGATCTGAAT TGGCTAGGTG
  K
  AGAAGAAACA CTCTCAATGG GGCAGGCTCG TCTCTCCCAA AAAATCATAG AGACAAGGCA
  CGCTGAAGGT GAACTGGTCT GGTCTCCCTC AGAACTGGGA GTTTAACTCG AGGCTCAGCA
  ACCAGCATCT GGACTCTAGT GTTTGGACCA GAACCACCAC AGCTGGGTCT GGAAGCTTTC
  AACATTACAT AATGGGTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866108	NES10828160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29645779					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866108	NES10828160	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28244326 () rs orientation: forward

Symbol	Name	Function Class
Gm42196	predicted gene, 42196	within coordinates
Rr574549	regulatory region 574549	95 bp proximal