rs29644902 SNP Detail

Summary

• ID
  rs29644902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28317874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG CAGAACGTGT TTTTTCCTTT
  Y
  TTTCCAATGG TCTAGGGCTG AAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46866501	NES10823229	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	C	C	C	C		C	T	C		C
ss320690651	CHEV_3_28162647	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29644902					SNP	T	C	T	T	T	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866501	NES10823229	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28317874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54170	predicted gene, 54170			within coordinates
Gm56802	predicted gene, 56802			within coordinates
Rr574555	regulatory region 574555			72 bp distal
Rr574556	regulatory region 574556			within coordinates
Rr574557	regulatory region 574557			480 bp proximal
Rr574558	regulatory region 574558			1503 bp proximal
Tnik	TRAF2 and NCK interacting kinase			Intron
				Noncoding-Transcript-Variant
Tssr28643	transcription start site region 28643			511 bp downstream
Tssr28644	transcription start site region 28644			392 bp downstream
Tssr28645	transcription start site region 28645			339 bp downstream
Tssr28646	transcription start site region 28646			312 bp downstream
Tssr28647	transcription start site region 28647			297 bp downstream
Tssr28648	transcription start site region 28648			288 bp downstream
Tssr28649	transcription start site region 28649			148 bp downstream
Tssr32865	transcription start site region 32865			510 bp downstream
Tssr32866	transcription start site region 32866			1505 bp downstream