rs29644896 SNP Detail

Summary

• ID
  rs29644896
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28317598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCACCCC CACCTCCCAG
  CTGAGTGGAG GAGTTGATAT GTCTCATTAT AACAGCCAAT GCAGCCGCCA TCCACGCACA
  AGCAAAGAAG CATGTCCCAT TTAAATACAC CCACGCAGCC CCAGCGCCCT TAGCCGATCA
  GGGCGCGCAG CCCACACGCA CCGCGGCTCC GGGCTTGGAG ATCCGCGCAG GTCGGGCTCC
  K
  GGATCCCGCG GATCGACGCT CTCGGAAGAT CGGGATCGGA CTCTTGCTGG GGCCCGGGTG
  GGCGGGGGAG GCTGGGCCCC GGGCCTCTCT GGCGGACAGC CGCATGAGGA CGCGAGCGAA
  ATAGACCGGG GTGGAATTGC CAAGGAAGAC GCTTCGGGGT GGTTTTGGTC CATTTCTCCC
  GCGAAGAGTC GACATGGCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866495	NES10823225	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29644896					SNP	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866495	NES10823225	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28317598 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54170	predicted gene, 54170			within coordinates
Gm56802	predicted gene, 56802			within coordinates
Rr574555	regulatory region 574555			within coordinates
Rr574556	regulatory region 574556			205 bp proximal
Rr574557	regulatory region 574557			756 bp proximal
Rr574558	regulatory region 574558			1779 bp proximal
Tnik	TRAF2 and NCK interacting kinase			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr28643	transcription start site region 28643			235 bp downstream
Tssr28644	transcription start site region 28644			116 bp downstream
Tssr28645	transcription start site region 28645			63 bp downstream
Tssr28646	transcription start site region 28646			36 bp downstream
Tssr28647	transcription start site region 28647			21 bp downstream
Tssr28648	transcription start site region 28648			12 bp downstream
Tssr28649	transcription start site region 28649			118 bp upstream
Tssr32865	transcription start site region 32865			786 bp downstream
Tssr32866	transcription start site region 32866			1781 bp downstream