rs29644043 SNP Detail

Summary

• ID
  rs29644043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28317209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TCCTGCACAG AGAGGCTCAA
  R
  AACGGCTGTT TAGATTCAGC ACTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45399441	mCV22687306	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss46866492	NES10823223	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	G	G	G		G	G	A	G		G
ss134712130	ENSMUSSNP3589706	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss320690649	CHEV_3_28161982	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29644043					SNP	A	A	G	A	A	A	G	A	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866492	NES10823223	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28317209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	within coordinates
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	within coordinates
Rr574556	regulatory region 574556	594 bp proximal
Rr574557	regulatory region 574557	1145 bp proximal
Tnik	TRAF2 and NCK interacting kinase	153 bp upstream
Tssr28643	transcription start site region 28643	145 bp upstream
Tssr28644	transcription start site region 28644	171 bp upstream
Tssr28645	transcription start site region 28645	295 bp upstream
Tssr28646	transcription start site region 28646	336 bp upstream
Tssr28647	transcription start site region 28647	363 bp upstream
Tssr28648	transcription start site region 28648	372 bp upstream
Tssr28649	transcription start site region 28649	507 bp upstream
Tssr32865	transcription start site region 32865	1175 bp downstream