rs29644037 SNP Detail

Summary

• ID
  rs29644037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28316748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTT GGGTGTGGCG ATATCCAGAC
  R
  GAGCTCACAT CTCTCGGATT TCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45508797	mCV22687305	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss46866486	NES10823219	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G		G	G	G	G		G	G	A	G		G
ss134712127	ENSMUSSNP5776581	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							G
ss320690648	CHEV_3_28161521	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29644037					SNP	A	A	G	A	A	A	G	A	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866486	NES10823219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28316748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	within coordinates
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	126 bp proximal
Rr574556	regulatory region 574556	1055 bp proximal
Rr574557	regulatory region 574557	1606 bp proximal
Tnik	TRAF2 and NCK interacting kinase	614 bp upstream
Tssr28643	transcription start site region 28643	606 bp upstream
Tssr28644	transcription start site region 28644	632 bp upstream
Tssr28645	transcription start site region 28645	756 bp upstream
Tssr28646	transcription start site region 28646	797 bp upstream
Tssr28647	transcription start site region 28647	824 bp upstream
Tssr28648	transcription start site region 28648	833 bp upstream
Tssr28649	transcription start site region 28649	968 bp upstream
Tssr32865	transcription start site region 32865	1636 bp downstream