rs29644034 SNP Detail

Summary

• ID
  rs29644034
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28316574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCC AGGTAGGTCA CCGCGGAAAA
  K
  CTACAAAGGA GGAAACACTG GGTTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45454785	mCV22687304	ABI	CRAMUS_MOUSE	f	SNP		T					G		T
ss46866483	NES10823218	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G	T		T	T	T	T		G	T	G	G		G
ss134712124	ENSMUSSNP3192959	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss320690647	CHEV_3_28161347	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29644034					SNP	G	T	G	G	G	T	G	T	T	T	T	T	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866483	NES10823218	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28316574 () rs orientation: forward

Symbol	Name	Function Class
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	300 bp proximal
Rr574556	regulatory region 574556	1229 bp proximal
Rr574557	regulatory region 574557	1780 bp proximal
Tnik	TRAF2 and NCK interacting kinase	788 bp upstream
Tssr28643	transcription start site region 28643	780 bp upstream
Tssr28644	transcription start site region 28644	806 bp upstream
Tssr28645	transcription start site region 28645	930 bp upstream
Tssr28646	transcription start site region 28646	971 bp upstream
Tssr28647	transcription start site region 28647	998 bp upstream
Tssr28648	transcription start site region 28648	1007 bp upstream
Tssr28649	transcription start site region 28649	1142 bp upstream
Tssr32865	transcription start site region 32865	1810 bp downstream