rs29643111 SNP Detail

Summary

• ID
  rs29643111
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28316517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTGACTTT ACACTTTTGA TAAAGAATGA CGGGTTACCA
  CTGCAAACAC CCAGCTCTTG AGTGAAAAAG CGAGCGAAGT CAAATAGCTC GCGGGTCAGG
  R
  CTCACTATCC TAGAGCCAAA CTTTCTCCAT GAATCCAGGT AGGTCACCGC GGAAAAGCTA
  CAAAGGAGGA AACACTGGGT TAGGTACTAT GTTGCCCAAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866480	NES10823216	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29643111					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866480	NES10823216	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28316517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	8 bp proximal
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	357 bp proximal
Rr574556	regulatory region 574556	1286 bp proximal
Rr574557	regulatory region 574557	1837 bp proximal
Tnik	TRAF2 and NCK interacting kinase	845 bp upstream
Tssr28643	transcription start site region 28643	837 bp upstream
Tssr28644	transcription start site region 28644	863 bp upstream
Tssr28645	transcription start site region 28645	987 bp upstream
Tssr28646	transcription start site region 28646	1028 bp upstream
Tssr28647	transcription start site region 28647	1055 bp upstream
Tssr28648	transcription start site region 28648	1064 bp upstream
Tssr28649	transcription start site region 28649	1199 bp upstream
Tssr32865	transcription start site region 32865	1867 bp downstream