rs29643108 SNP Detail

Summary

• ID
  rs29643108
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28316293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCAAGGC CATCCCCAGC
  TGCACAGTGA AGGGAAGACT TCCTTTAAGT ACTTAAGATC TGTCTCATAA CCATACCAAA
  TCAAACAACC AATAAGATAA ATCAAAAAGA ACCTCTACTC CCCCCAAAAG AAAACAAAAC
  AAAAAGTCAA ATAAAAATCA ACCCCCCCCA GTATGTTTAG CTTTTTATCT CAGTAGATGC
  K
  AGAGGAACAC TCAGAACTAT TGATGAGTTG AAGCCAGTGG GAAGAGTTCA CTATAAATGT
  TTTCTTCCGA CGTATTTTGC GTGGCCAAAC TAGGAGACAG GCAAGGATGC GAGAGGGTTG
  GGGAAGTGAC TTTACACTTT TGATAAAGAA TGACGGGTTA CCACTGCAAA CACCCAGCTC
  TTGAGTGAAA AAGCGAGCGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866477	NES10823210	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29643108					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866477	NES10823210	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28316293 () rs orientation: forward

Symbol	Name	Function Class
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	581 bp proximal
Rr574556	regulatory region 574556	1510 bp proximal
Tnik	TRAF2 and NCK interacting kinase	1069 bp upstream
Tssr28643	transcription start site region 28643	1061 bp upstream
Tssr28644	transcription start site region 28644	1087 bp upstream
Tssr28645	transcription start site region 28645	1211 bp upstream
Tssr28646	transcription start site region 28646	1252 bp upstream
Tssr28647	transcription start site region 28647	1279 bp upstream
Tssr28648	transcription start site region 28648	1288 bp upstream
Tssr28649	transcription start site region 28649	1423 bp upstream