rs29643105 SNP Detail

Summary

• ID
  rs29643105
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28315854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGAAGA AGAAGAAGAA
  GAAGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG AAGAAGAAGA AGAAGGGAAG
  AAGAAGGAGA AGGAGAAGAT GATGATGACA CACAAGGAAA AGTGTGGTGG AGGGAAAAGA
  TGGCTTCTAC TTGGTCCCTT CGTGGAGGCT TGTGGGTTCG GAACAGCATT CTAGTTTCAT
  S
  GTATGGTTTA GAGAGCACAT GACCCACCCC AATGAGTCCA AGACTAAACA GTCCAGCTAA
  CACTAATTTC ATTAGTGTTG GTCCGTTCAT TCATTCTTTC AACTTGTTCT GAAGCTCATA
  ATTAGTTTAT TCTTCATGAC TTTAAAAAGA AGTGGCAACA GCCCAAGTGT TGGTGTCCAT
  GTGTAATCTG AGTACTTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866474	NES10823207	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29643105					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866474	NES10823207	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28315854 () rs orientation: forward

Symbol	Name	Function Class
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	1020 bp proximal
Rr574556	regulatory region 574556	1949 bp proximal
Tnik	TRAF2 and NCK interacting kinase	1508 bp upstream
Tssr28643	transcription start site region 28643	1500 bp upstream
Tssr28644	transcription start site region 28644	1526 bp upstream
Tssr28645	transcription start site region 28645	1650 bp upstream
Tssr28646	transcription start site region 28646	1691 bp upstream
Tssr28647	transcription start site region 28647	1718 bp upstream
Tssr28648	transcription start site region 28648	1727 bp upstream
Tssr28649	transcription start site region 28649	1862 bp upstream