rs29642152 SNP Detail

Summary

• ID
  rs29642152
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28315497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTTGAA GCTATATCCA
  TCCTTTCTGT CTGAGGTGGG GCTTCCTCAG CAGCAGTGGA CTAGTCTGAA CCTATTGTAA
  ACCCCAAAGT AGAGTCTTGT GCTATTAGAG TTAGGGGAAA AGACCTTTTT GTGGTTTCAC
  CTAAGTCTGT AGTACTTTTC TGTGAGCATG TTTATCTCCT ATTTTCAAGT CTGAAGCTTT
  W
  AAAGGAGCCC TGCGTATGAA TCTCAATACC CTAATCTGAA ATTATTTTGC TTCATCTTGA
  GACATGTTAA CCTGTTGTCT AGAGAAAGGG TGAGATAAGA AGGAGGAGGA GGAGGAGGAG
  GTGGAGGAGG AGGAGGAGGA GAGGAAGAAG AAGAAGAAGA AGAAGAAGAA GAAGAAGAAG
  AAGAAGAAGA AGAAGAAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46866471	NES10823278	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29642152					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866471	NES10823278	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28315497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	1028 bp proximal
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	1377 bp proximal
Tnik	TRAF2 and NCK interacting kinase	1865 bp upstream
Tssr28643	transcription start site region 28643	1857 bp upstream
Tssr28644	transcription start site region 28644	1883 bp upstream