rs29642149 SNP Detail

Summary

• ID
  rs29642149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28315377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGCAGAA CTCTGCCTGA
  TCTGCCCTCT GCCCTCTCCT GGTCCTAAGA TTTCCCACCC TTGCCTGCCA CTGCTTTCTA
  CCCACTCCTC CCTCCCTCCC CAGGGTGCAC TGTGTTGAAC CCTCTTTGAA GCTATATCCA
  TCCTTTCTGT CTGAGGTGGG GCTTCCTCAG CAGCAGTGGA CTAGTCTGAA CCTATTGTAA
  R
  CCCCAAAGTA GAGTCTTGTG CTATTAGAGT TAGGGGAAAA GACCTTTTTG TGGTTTCACC
  TAAGTCTGTA GTACTTTTCT GTGAGCATGT TTATCTCCTA TTTTCAAGTC TGAAGCTTTT
  AAAGGAGCCC TGCGTATGAA TCTCAATACC CTAATCTGAA ATTATTTTGC TTCATCTTGA
  GACATGTTAA CCTGTTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866468	NES10823277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29642149					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866468	NES10823277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28315377 () rs orientation: forward

Symbol	Name	Function Class
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	1497 bp proximal
Tnik	TRAF2 and NCK interacting kinase	1985 bp upstream
Tssr28643	transcription start site region 28643	1977 bp upstream