rs29641223 SNP Detail

Summary

• ID
  rs29641223
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28315108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTGTTG TCTCCATGCT
  GTTTTACAGC TGAGCGGTCC TTCCATCATG GAGTCAGTGG TGCTAAGTCC TTGGTGCCTA
  CTAAGGACTG GGGCCCTAGT ATGTCTAGAC CTCTTTTTAT AGTAGTGACT TATGTTTTCT
  TTTAAATTAA ACACAAAGCA AAAACTGTTG ATAAGAGTGC AGGATGGAAA GAAATCAGAC
  K
  TCTGCTGGAA CAGCTGAAAT CTGAAATGTA CTTGGCCTAA AGAAGAGAGT TTGATGTTCC
  TGAATAGGGC ATGCAGAACT CTGCCTGATC TGCCCTCTGC CCTCTCCTGG TCCTAAGATT
  TCCCACCCTT GCCTGCCACT GCTTTCTACC CACTCCTCCC TCCCTCCCCA GGGTGCACTG
  TGTTGAACCC TCTTTGAAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46866462	NES10823275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29641223					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46866462	NES10823275	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28315108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	1417 bp proximal
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	1766 bp proximal