rs29638029 SNP Detail

Summary

• ID
  rs29638029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108353835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGGGCC AGCATGTCTC
  CAAAAAACCC AAACCTAGTC AGGCTTAGTA GTAGGTGCCT TTTATATCAC ATCGGAGGTA
  GAGAGCTCTG TAAAGTCAAG GCCAGCCTGT TCTAAATACC GAACTCCAAG CCAGCCAGAG
  CTGTGTAGTG AGAATCTGTC TCAAAAACCA AACACACATA CAACCAAACC AAAAACCTAC
  Y
  GCTCTCACAC AGTAGAAAAC ATTAACTAAC ACGGAACCCA CAAACCTGCT CTCCCCTTCC
  TGTGTCTTCT CCTAAAAAGA ACACTTTCCT GAGTATCTAG CAATCGGACG GCTGGAAAAT
  GGAAAGCAGC CAAGAGAAGT TATAATAATA AATGTTAAGG ATAGAGAGCT GCAGTCTTTG
  CAGAAAATAC TTGAAGACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46864957	NES10695376	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29638029					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864957	NES10695376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108353835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13702	CpG island 13702	1141 bp distal
Gm56809	predicted gene, 56809	469 bp downstream
Rr397936	regulatory region 397936	1123 bp downstream
Rr583238	regulatory region 583238	831 bp distal
Rr583239	regulatory region 583239	1264 bp distal
Rr583240	regulatory region 583240	1125 bp distal
Sars1	seryl-tRNA synthetase 1	1310 bp upstream
Tssr35146	transcription start site region 35146	1341 bp upstream
Tssr35147	transcription start site region 35147	1308 bp upstream