rs29637700 SNP Detail

Summary

• ID
  rs29637700
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108384159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTCACCT CCTTTCTAGT
  GACTTTACTT CTTAATAGGT TCCATCCCTT TCCCAGATGA CTTCCTCTGT CAGAGACTCT
  AAAGATGCCT TGTTGGCCTG TACTGGGAGC TCAGAGACTG AATATCTCCC CATCTCTCTG
  TCCCTGTCTT ATTAGGCTGG GCAAGAAGGA AGTGTTGGGA AACAGCTGGA ATCGGCTCAG
  Y
  GCCTTTATTC AGTAATAAAG GCAGGAGGTT CAATTCCTCA GAGAGGGAAC TAGAAACTCC
  GGTTGGTGAC TGACTTGGCC AGGAGAGATT TGGGGGTGGG GAGAGAGGTG CTGAACACGT
  GCCAGTTCCC AGGGCCTTGT GGATCAGGTC TGGCAGAGCA GAAGTTAAGT GTTAGAAAAT
  GTATTTGGCA CAAAGACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46865428	NES10730628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29637700					SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46865428	NES10730628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108384159 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Elapor1	endosome-lysosome associated apoptosis and autophagy regulator 1			Intron
				Noncoding-Transcript-Variant
Rr583246	regulatory region 583246			within coordinates
Tssr35148	transcription start site region 35148			1809 bp upstream
Tssr35149	transcription start site region 35149			1777 bp upstream