rs29636301 SNP Detail

Summary

• ID
  rs29636301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108351543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGAGTTCA AGGCCAGCCT
  GGTCTACAGA GCAAGTTCCA GGATAGCCAG GGCTACAGAG AGAAAGAAAT CCTGTTTATT
  TTGGAGGGTG GGAGTAGGAG GGAGACACTC TTGGATCGTG GGATTGCCTT AGCAGTGCTC
  TTATAAACCA GGTTCTCAGC TGGTTGCAGA CCTATTGCAT CAGACTACCC GAGTCACATG
  Y
  CACTGACAAC ATCCGGTCTG CCAGGTGATC ACTTGGGAGG CAGAGGATTC TAGAGCTTCT
  TTTAATTTCC TGAATGACGA TGGGTCACTT CTACGCTGCC AACGTCTTTT CCAGAAAACT
  ACCACAAATC ACAACCATCC TCAGTAATTA CAAGCTTTTT CTTGCCTTAC AGCACCCCTC
  CGTCCTATCT GATCTAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46864939	NES10695527	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29636301					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864939	NES10695527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108351543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13702	CpG island 13702	477 bp proximal
Gm56809	predicted gene, 56809	23 bp upstream
Rr397936	regulatory region 397936	868 bp upstream
Rr583237	regulatory region 583237	within coordinates
Rr583238	regulatory region 583238	932 bp proximal
Rr583239	regulatory region 583239	1007 bp proximal
Rr583240	regulatory region 583240	1146 bp proximal
Sars1	seryl-tRNA synthetase 1	Intron
Tssr31251	transcription start site region 31251	47 bp upstream
Tssr35146	transcription start site region 35146	920 bp downstream
Tssr35147	transcription start site region 35147	956 bp downstream