rs29631852 SNP Detail

Summary

• ID
  rs29631852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCAGGTG CCCTCTTCTC
  CCGCTAATTC CAGGGCCTCT GTTTTGGAGG CTCGGTCTGG ATTGCCTGCC TTTTTAACTT
  AGCCGGAAAA GCCCCCTTGA TTCCCGCGGT TTCAACTTCC TGGGTCTGTT AGGGTCAACT
  GGCCAGAAAG CTATTTTGCA TGCGGCTATT CTCTAAGACC ATGGGGGAAC GGTTGGCTTG
  R
  ACATCTATTT TAATTTTAGT TACTTTACTT CAGGCCTATC TGGGTCTAGG GAAATGCTTA
  CAGACGAGGA GCAGGAAGAG AGCAAATTAT TTTAGTCTGT GGATACGGGA GGCACGTTCC
  CAACAGGTCC TGGCCACTGG GCTGATGGGT ATCAAGAATT GTGTAATTGG CTTCGGAATC
  AATCCGAAAT AGTCCCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45348348	mCV23507048	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A
ss148318883	ENSMUSSNP901648	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320619378	CHEV_2_172373746	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29631852					SNP	G	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390166 () rs orientation: forward

Symbol	Name	Function Class
Rr571697	regulatory region 571697	857 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	1335 bp upstream
Tssr21967	transcription start site region 21967	1390 bp upstream