rs29624223 SNP Detail

Summary

• ID
  rs29624223
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120932387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG GGGTACGCGG CTTAACTTCT
  Y
  TGGTTAGTCT CCTTGTAAAT AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45344474	mCV27558623	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147379384	ENSMUSSNP7009333	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			C
ss320481823	CHEV_2_120927642	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29624223					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120932387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563773	regulatory region 563773			8 bp proximal
Rr563774	regulatory region 563774			306 bp proximal
Tgm7	transglutaminase 7			Intron
				mRNA-UTR
Tssr25900	transcription start site region 25900			741 bp upstream