rs29623413 SNP Detail

Summary

• ID
  rs29623413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120932321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACAATAA TTAACTTCCC CTCCCCTGCT CTTTTTTTTT
  TTCTCAGCAG CTCTCCAAGT TAAAAGCAAT GAGCCCAAAA CACATGAGAA TTTTAAAAGG
  R
  AAAAAAAAAA GTTGACCAGT TTCAAAAGAG AAACTGTGTG ACCTGGGGTA CGCGGCTTAA
  CTTCTTTGGT TAGTCTCCTT GTAAATAAGA AAGTGAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45345844	mCV27558634	ABI	CRAMUS_MOUSE	f	SNP	A		G	A	G
ss147379375	ENSMUSSNP3429301	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss320481822	CHEV_2_120927576	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29623413					SNP	A	A	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120932321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563773	regulatory region 563773			74 bp proximal
Rr563774	regulatory region 563774			372 bp proximal
Tgm7	transglutaminase 7			Intron
				mRNA-UTR
Tssr25900	transcription start site region 25900			675 bp upstream