rs29610117 SNP Detail

Summary

• ID
  rs29610117
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194721141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTATTTTTTA ATTTACCCCA CTAAAGTAGG AGACTGCAGC
  TCCTCTAAGT ATGACAGATT GGGTCTGTGG TATTAACTAC ACATTAAGTC TTTAAAAAAA
  M
  AAAAAACATA GCTACTCTGT CCAAAGCTCC CAATTAATTT GTACTGAAAA TTTGATTGAA
  ACTCCCCCAG GCCATGATTC TGGCTCTTTA ATGAGTTAAG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49548623	NES12893349	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29610117					SNP	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49548623	NES12893349	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194721141 () rs orientation: forward

Symbol	Name	Function Class
A330023F24Rik	RIKEN cDNA A330023F24 gene	925 bp downstream
Cd46	CD46 antigen, complement regulatory protein	mRNA-UTR
Mir29b-2	microRNA 29b-2	1713 bp downstream
Mir29c	microRNA 29c	1199 bp downstream
Rr426755	regulatory region 426755	518 bp distal
Rr426756	regulatory region 426756	1700 bp proximal
Rr426757	regulatory region 426757	1783 bp proximal
Tssr10863	transcription start site region 10863	1715 bp downstream