rs29609032 SNP Detail

Summary

• ID
  rs29609032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108292412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGTCCCC GACTCGCCGA
  CAGGAATGCC TTCTGCTAGC TGTTGTCCAG CATGGTGCCA TATTTGTTTT TCAGTCATGA
  GGAAGAAGAC ATAACAGTAT TAGTGAGTCC AGAGAAACCA CTTCGACGGG GCCTCGCCCA
  TCGGAGTAAC CCAAATGAAG TAGCTCCCGC CCTCCAGGGT GTGCGGTTTA GCTTGGGCCC
  R
  CTCAGCCCAG AGAAGCTGGA AGAGATTCTT GATGAAGCCA ACCGCCTGGC GGCTCAGCTG
  GAGGAGTGTG CCCTGAAAGA TCGGGAGAGG GCTGGTACAG GCCCTGGAAG GCCCAGCCCC
  AGAGGGAAAC CCAGTCCTCG GCGGGAGACC TTCGTCCTGA AGGATAGCCC TGTCCGAGAT
  CTGCTGCCCA CCGTGAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46864410	NES10697881	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609032					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864410	NES10697881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108292412 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13699	CpG island 13699			960 bp distal
Gm12522	predicted gene 12522			1355 bp upstream
Psrc1	proline/serine-rich coiled-coil 1			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr375556	regulatory region 375556			within coordinates
Rr583223	regulatory region 583223			1360 bp distal
Rr583224	regulatory region 583224			1227 bp distal
Rr583225	regulatory region 583225			537 bp distal
Tssr31246	transcription start site region 31246			1210 bp downstream
Tssr31247	transcription start site region 31247			1198 bp downstream
Tssr31248	transcription start site region 31248			1095 bp downstream
Tssr31249	transcription start site region 31249			1079 bp downstream