rs29609029 SNP Detail

Summary

• ID
  rs29609029
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108291227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             AGAAGAAAAG CTTCCTGCGT AGACTGTGAA GCGAGGTGGG GAGTGGAAAC
  Y
  GAGTGTGCGC TGGAGGTGTG GCGGGGATGT GGTGCCGCGG AGTGGAAAAT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46864407	NES10697880	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29609029					SNP	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864407	NES10697880	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108291227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13699	CpG island 13699			within coordinates
Gm12522	predicted gene 12522			170 bp upstream
Psrc1	proline/serine-rich coiled-coil 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr375556	regulatory region 375556			within coordinates
Rr583221	regulatory region 583221			1392 bp distal
Rr583222	regulatory region 583222			852 bp distal
Rr583223	regulatory region 583223			175 bp distal
Rr583224	regulatory region 583224			42 bp distal
Rr583225	regulatory region 583225			627 bp proximal
Tssr31246	transcription start site region 31246			25 bp downstream
Tssr31247	transcription start site region 31247			13 bp downstream
Tssr31248	transcription start site region 31248			72 bp upstream
Tssr31249	transcription start site region 31249			94 bp upstream
Tssr35142	transcription start site region 35142			1370 bp upstream