rs29608080 SNP Detail

Summary

• ID
  rs29608080
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108290114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCGTCCAC AGGCCCAGCT GTGATGGTCT TTCCGAAGCA
  GGCGCAACAG AACTCCTGAA GATGCTTGCA GATGTTTGCA GATGTCTCAG AGGATGGTCC
  W
  AGAGTAGAGT GGCACAGGCC TTTAGTCCCA GCACTTGGGA GGTAGGGGCA GGAGGGTCGG
  GACTTCAAGG TCATCCTTGG CTATATGGTG AATTCAAAGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46864398	NES10697914	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29608080					SNP	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46864398	NES10697914	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108290114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13699	CpG island 13699	668 bp proximal
Gm12522	predicted gene 12522	within coordinates
Psrc1	proline/serine-rich coiled-coil 1	1041 bp upstream
Rr375556	regulatory region 375556	within coordinates
Rr583219	regulatory region 583219	1903 bp distal
Rr583220	regulatory region 583220	1862 bp distal
Rr583221	regulatory region 583221	279 bp distal
Rr583222	regulatory region 583222	within coordinates
Rr583223	regulatory region 583223	489 bp proximal
Rr583224	regulatory region 583224	939 bp proximal
Rr583225	regulatory region 583225	1740 bp proximal
Tssr31246	transcription start site region 31246	1031 bp upstream
Tssr31247	transcription start site region 31247	1089 bp upstream
Tssr31248	transcription start site region 31248	1185 bp upstream
Tssr31249	transcription start site region 31249	1207 bp upstream
Tssr35142	transcription start site region 35142	257 bp upstream