rs29604377 SNP Detail

Summary

• ID
  rs29604377
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108218181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAGTTCA CACTAGGTGA
  TGAGGGTGGG AACATGTGTC ATGACATCGG TGTGTCTTCT GCAACTTGAA TAGTAGGCTC
  CATTCCTCAG CAGGATGCAG AGCTGCTAGC ACTCTAAAGT AAGTCATTAT CGTCTTTATC
  CTGTATTTCT GTCCCATCTC TTCCCAAGGG ACCTAAATGA ATCACAAAAT CCCAGCAGCC
  M
  ATTCTAGAAA CACCACAGGA GCCAGAGGCC TCTGGGAGCC CTGCTGGGCT GTAACTCTTC
  TTCACTTGAT TGTTCTACAG CTGCTCTTGG CCCAGGTGCA GGGAACTGAT GCTGAGGCTC
  TGAAATGCTT CAACCCCACT TCCCTCCTCC AGCAGGTGTG ATCTTTGACT TCTCTGCCCA
  GGGGCCTGGA GCCAGAGCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46863675	NES10700975	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29604377					SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863675	NES10700975	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108218181 () rs orientation: forward

Symbol	Name	Function Class
Rr583203	regulatory region 583203	7 bp proximal
Rr583204	regulatory region 583204	926 bp proximal
Sort1	sortilin 1	Intron