rs29604374 SNP Detail

Summary

• ID
  rs29604374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108218119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGTCATT TCTGCCTAGG
  AAGGGAGCTT TTTAGATCAC CCTATTTCAG TCAACCTCGT TACTACAGTT CACACTAGGT
  GATGAGGGTG GGAACATGTG TCATGACATC GGTGTGTCTT CTGCAACTTG AATAGTAGGC
  TCCATTCCTC AGCAGGATGC AGAGCTGCTA GCACTCTAAA GTAAGTCATT ATCGTCTTTA
  Y
  CCTGTATTTC TGTCCCATCT CTTCCCAAGG GACCTAAATG AATCACAAAA TCCCAGCAGC
  CCATTCTAGA AACACCACAG GAGCCAGAGG CCTCTGGGAG CCCTGCTGGG CTGTAACTCT
  TCTTCACTTG ATTGTTCTAC AGCTGCTCTT GGCCCAGGTG CAGGGAACTG ATGCTGAGGC
  TCTGAAATGC TTCAACCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46863672	NES10700974	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29604374					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46863672	NES10700974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108218119 () rs orientation: forward

Symbol	Name	Function Class
Rr583203	regulatory region 583203	69 bp proximal
Rr583204	regulatory region 583204	988 bp proximal
Sort1	sortilin 1	Intron