rs29600036 SNP Detail

Summary

• ID
  rs29600036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108110153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGCCTA ACCCAGAAGA
  ATATTACCCT GCCTAGCCTC CCAGAAGTCC CTCCTTAGAG AGGTCACAGG GTCAAAGCAA
  AGCAGGCTTC AACAGGAAAG GTAAATAAAC CTAGCTGCAA GCTTTGCCAG AACCTGGAGA
  ACCTGCTGCA ATCTGAAATG ACTTGGTGGG CCTGAAGTTG TGGACTTGCT TTTCAATGTC
  Y
  TAATGCCAGT GGGAGAACCA GAGAACTAGA GCAGCCCACC CACCCAGCTA CTCTGCATGC
  TGGGGCCTTT CCCCGTAAGG AAAAGTAGCT CCAAGTCCTC GAGGGAGGGT CACAGCCAGT
  TCAAAAAGAA GTGGTCCTTT CATTAAAGCA AAGATAGGAG ACAGCATGTC CTAGGCCCAA
  AGGAAAAGAC TGGGCATAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46862584	NES10705552	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29600036					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46862584	NES10705552	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108110153 () rs orientation: forward

Symbol	Name	Function Class
Atxn7l2	ataxin 7-like 2	Intron
Cpgi13693	CpG island 13693	1760 bp distal
Cyb561d1	cytochrome b-561 domain containing 1	1625 bp upstream
Gm56801	predicted gene, 56801	1587 bp downstream
Rr583171	regulatory region 583171	1513 bp distal
Rr583172	regulatory region 583172	1910 bp distal
Rr583173	regulatory region 583173	33 bp distal
Rr583174	regulatory region 583174	1308 bp proximal
Tssr35131	transcription start site region 35131	1979 bp upstream