rs29600023 SNP Detail

Summary

• ID
  rs29600023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27915736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGCTAGG AAATGACATT
  ATAAAAGGGA TTTATTGTCA ACTGGTTTTT TGAAATATAT ATTAAAGTGT CAAGGAGCTG
  CGATACTCAG TCTTAGCTGT AGTCAGTGTT TGGTGGCTTC TGCTAACTCC CAGGAGGACC
  TGCGTGAGGA GAACAAAGAA AATCGACAAA AGCTCTAACT GAGACTGTCC TTCATAGCCA
  Y
  CGTGCAGTCC CTACTGGGGC ATGACAAGTA ACAGGCACTC GGTTACAGAA AGCAGCCGCC
  CAGCCAGTGA GCAGAGGTAT AGAACGCAGA AGCTAGTTCT CCAAACCTTG GTACCAGCCA
  GAGGTAGGGC CCTGTGGTGC AGCCTCTTGA TGTGTTGGCC AGAGCCCTTA AAGCCTTGCC
  TTGGTTCAGG GCTGAACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45565106	mCV24246997	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
ss46861921	NES10856599	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T		T	C	C	C	C	C	C	C
ss134708188	ENSMUSSNP3382313	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29600023					SNP	C	C	T	T	C	C	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861921	NES10856599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27915736 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	1098 bp downstream
Rr574492	regulatory region 574492	1766 bp distal
Rr574493	regulatory region 574493	within coordinates
Rr574494	regulatory region 574494	883 bp proximal
Rr574495	regulatory region 574495	1901 bp proximal
Tssr32860	transcription start site region 32860	1869 bp downstream