rs29597509 SNP Detail

Summary

• ID
  rs29597509
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27918675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGTGGT GATCGAAGAC
  CCGGGGCCTG GGAGACTTGC ACTGGATTGC TAGATAGCAA TGTTTCAGCC CTGTGCCCTT
  GAAGAAGTCA CGAAGCCTCT CCCAATCACA GATATCAGAT CTGCAAAATG AAGGTGTTTA
  TGTCTTATGT CTGAAGTGTT ATGTCTAAAG TGTTTACTCT GAATGTGTCC GTTTTCAGAT
  R
  AGTGGGATCC ATACTGACTG ATGTTTGAAG ACATGTACTA AGTGTGTGGA ACGAAGCTCG
  AAGCCTTGAA CTCTTACATG ATGCGTCTGT GTGATGTGTA CAGGTGTGCA TGCACCACAC
  TGCATGCGTG AAGTCAGAGG ACCAAGTTGT GGAGTCAGTT CTCTCCCTCC CCATCAAATG
  GGTTCAACAG AACTGATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46861987	NES10856316	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29597509					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46861987	NES10856316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27918675 () rs orientation: forward

Symbol	Name	Function Class
Gm56777	predicted gene, 56777	1028 bp upstream
Rr574494	regulatory region 574494	1039 bp distal
Rr574495	regulatory region 574495	538 bp distal
Tmem212	transmembrane protein 212	1540 bp downstream
Tssr32860	transcription start site region 32860	1055 bp upstream