rs29579500 SNP Detail

Summary

• ID
  rs29579500
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84576032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAATGTTG CTGTTTAATA TGCAAGGTAT GTGGGGGACA
  TGCATGGAGG TCAGACGACA ACTAAGATTG GTTTTGTCCT TCCACCATGA AGAAACTGTT
  K
  TTTTTTTTTT TAACAAGGCT AAAAACCAAG ATGTTGCTGG GCTTGGTTGC AACAATCCTG
  TAGCCTCAGC ATTTAGGAGA CAAAAGCCTG AAGGTAGGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45341876	mCV23820562	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
ss146834295	ENSMUSSNP6658960	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320371980	CHEV_2_84585845	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29579500					SNP	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84576032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11865	CpG island 11865	1719 bp distal
Gm19426	predicted gene, 19426	1087 bp upstream
Gm57423	predicted gene, 57423	1100 bp downstream
Rr373462	regulatory region 373462	679 bp downstream
Rr560324	regulatory region 560324	1990 bp distal
Rr560325	regulatory region 560325	1789 bp distal
Rr560326	regulatory region 560326	1283 bp distal
Rr560327	regulatory region 560327	872 bp distal
Tssr18681	transcription start site region 18681	1779 bp downstream
Tssr25039	transcription start site region 25039	1987 bp upstream
Tssr25040	transcription start site region 25040	1924 bp upstream
Tssr25041	transcription start site region 25041	1905 bp upstream