rs29578394 SNP Detail

Summary

• ID
  rs29578394
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43612215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTATTA CTATATGGTT
  TTGTTCAAGG ACTTTATTTT TTTCAGTTTG GTCTGGTTAT TCATGACAGG GTTTCTCTGT
  GTAACAGAGC CCTGTCTGAC CTGACTCACC TTGCAGATCA GGCTGTTCTC AAACACACAG
  AGATCTACCT GCCTCTGCCT CCCAAGTGCT GGGATTAAAG ACATGTGCTA CCACACCTGG
  W
  CTACTGTATG TTATTTTATT GCACAGATTT AGCCATGTAA TAGAATTGGT TTATCCATTT
  ACTTTTTTCA TTTATTTACT TATTCCTTCT AGTTGTTTTC AATTGGGGGT ATTAAAGAAA
  ATGTTATTAT AAACTTACTT GTAAGGAGTT TTAGTAGTCA AATACATACA TTCCTGTTCT
  GTATACATGC GTATATCTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39591912	mCV23924707	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss147018561	ENSMUSSNP1202445	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T		A
ss325600655	CHEV_18_43638804	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29578394					SNP	A	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43612215 () rs orientation: forward

Symbol	Name	Function Class
Eif3j2	eukaryotic translation initiation factor 3, subunit J2	1354 bp upstream
Gm54727	predicted gene, 54727	1373 bp upstream
Gm58438	predicted gene, 58438	within coordinates
Rr537089	regulatory region 537089	1082 bp distal
Tssr153167	transcription start site region 153167	1349 bp upstream