rs29558657 SNP Detail

Summary

• ID
  rs29558657
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167960452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACGCATAAAC ACAAAGTAGA TCTAAAACTA GAGACTCCAG CTGTGGCGGG CGGTCTGTCT
  AGGTGTAGGG AAAAAAAAAA AAAAGTTACC TACCCAAGTT CTCCACTCGG CTTCTTTTAA
  GACCCCCCAC AGTGGTGCAG GCAGTTGGTA GATGCTCGCA AGACCCCTTC TCGGAAAATC
  GGGGGCTAAG CTTGTACTTA GATGTACAAG GTGTAGAATT CTCATCTGCA CAAGGCTCTA
  AGTACCATTC CAGCATTCTC AAATTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCAC
  W
  CACACACACA CACACACACA CACACACACA CACACACACA CACACACCAG GAGAGAAATA
  GCTGTTAATT TGAAGGTCTG ACTCAGCTCA CTGTCAGAAC ACGTACTTGC CTAGCAAACT
  GCAGGCCCCT CCATCCAGCA GTGTAAGTGG AGGAGAGAAG AGAGAAGGCT CCAAGTAAAG
  AGCATTTGCT GCTCCTGCAG AGGCCCGGGT TCTGTTCCCA GCACCCACAA TGGTGACCTA
  CAGCTGCCTG TAACCTCAGC TACAGGGGTG TCCGATACCT TCTTCTGGCC TCCATGACAC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45335459	mCV25281631	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs29558657					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167960452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12763	CpG island 12763	578 bp distal
Gm52960	predicted gene, 52960	within coordinates
Rr570896	regulatory region 570896	368 bp distal
Rr570897	regulatory region 570897	1202 bp distal
Rr570898	regulatory region 570898	603 bp proximal
Tssr27826	transcription start site region 27826	638 bp downstream