rs29530544 SNP Detail

Summary

• ID
  rs29530544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:107170408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTG CTAACCTATC AACAGGATGT
  Y
  GAAAGCCAGG GCATGGGAGT GCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39081772	mCV25104522	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145160370	ENSMUSSNP5282380	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss324518091	CHEV_13_107823980	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29530544					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:107170408 () rs orientation: forward

Symbol	Name	Function Class
3830408C21Rik	RIKEN cDNA 3830408C21 gene	382 bp downstream
Rr389031	regulatory region 389031	within coordinates
Rr485591	regulatory region 485591	within coordinates
Rr485592	regulatory region 485592	380 bp proximal
Tssr120950	transcription start site region 120950	384 bp upstream