rs29523586 SNP Detail

Summary

• ID
  rs29523586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA GTTAAGAGCC CTGACTGCCC
  Y
  TCCAGAGATC CTGAGTTCAA TTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss45326156	mCV22579017	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss320480950	CHEV_2_120801876	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs29523586					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	802 bp proximal
Gm55820	predicted gene, 55820	1511 bp downstream
Rr563749	regulatory region 563749	138 bp distal
Rr563750	regulatory region 563750	64 bp proximal
Rr563751	regulatory region 563751	375 bp proximal
Rr563752	regulatory region 563752	387 bp proximal
Rr563753	regulatory region 563753	897 bp proximal
Rr563754	regulatory region 563754	903 bp proximal
Rr563755	regulatory region 563755	969 bp proximal
Rr563756	regulatory region 563756	1351 bp proximal
Tmem62	transmembrane protein 62	877 bp upstream
Tssr19722	transcription start site region 19722	941 bp upstream
Tssr19723	transcription start site region 19723	1008 bp upstream
Tssr19724	transcription start site region 19724	1108 bp upstream