rs29516340 SNP Detail

Summary

• ID
  rs29516340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153505046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGCACA TTGGATTTTA
  TGTGTGTTGC GTAGGTCAGT GGACAGTTTA CAAGAGCTAG GTTTTCACCT TAAAAGCATG
  TAGATTCCAG GGACCAGACT CAAGATTAGC AGGCTTTGGC AAGTCTCCTA ACCCACTGAG
  CCCCTTGGTT AAGTGTTAAT GTCCTTCAGC TACTACGGGT AATTCAGATT ATAACCTGAG
  Y
  CTCAGGGTAA AATGACATTT GACAGAGCAA AGAGCATATG AGCACAGCCG CTTGACAGTC
  ACTTGATGGT GACAACAAGA ACTTGAGCAA AAACCACTTA ATGTTTGGAT ATCTTCAACA
  TTTCCTAACT ACAATCTTTT TGAGGAGGAC TTCATATTCA TTACCCATTC CTGCTAAAAC
  AACAGGGAAC TGAGTTACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss45324905	mCV23544213	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148000192	ENSMUSSNP2445486	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs29516340					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153505046 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnmt3b	DNA methyltransferase 3B			Intron
				Noncoding-Transcript-Variant
Rr567718	regulatory region 567718			785 bp proximal