rs29514813 SNP Detail

Summary

• ID
  rs29514813
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115897681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTCCCA AAAGGAAAAG
  GAAGCGAGTA GGGTTAAAAA GGTAAATACC CGACTAGGTT TTGGTAGAAA CTAGTTCTGG
  CCGGGGTCCC GCCCAATCCC TGGCCGGAGT TCCAGCTGGC TTTACCTCTG CTCTGCTGTT
  TCCCCGCGGC TGCGCGTCAA TCACCGAGAG ACGAGAGCTG GGGGCGGAGC TTTGGTCACC
  S
  GGCGCGCGTA GCCGGGTTCA CCCTGCCGCC ACCAGGCAGC TGGCAGCGCG ACCCAGCCAC
  GCACTGGGAG CGCGCCCTCT CCCCAACTTC TCACCCTCGC CCTGGGTTCC GGGCCCCAGG
  CCCAGAGAAT AGCAAACAGA GTAAGGGTTT GCTGTTCAAC TGCGGCCTCC CTCCCCAACT
  CTGAACCATC CCGTGACAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45324398	mCV22793498	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29514813					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115897681 () rs orientation: forward

Symbol	Name	Function Class
2700033N17Rik	RIKEN cDNA 2700033N17 gene	within coordinates
Cpgi12068	CpG island 12068	1198 bp distal
Cpgi12069	CpG island 12069	within coordinates
G630016G05Rik	RIKEN cDNA G630016G05 gene	25 bp upstream
Meis2	Meis homeobox 2	mRNA-UTR
Rr562986	regulatory region 562986	1663 bp distal
Rr562987	regulatory region 562987	1055 bp distal
Rr562988	regulatory region 562988	8 bp distal
Rr562989	regulatory region 562989	278 bp proximal
Rr562990	regulatory region 562990	779 bp proximal
Rr562991	regulatory region 562991	905 bp proximal
Tssr19467	transcription start site region 19467	13 bp upstream
Tssr19468	transcription start site region 19468	733 bp upstream
Tssr25725	transcription start site region 25725	1962 bp upstream
Tssr25726	transcription start site region 25726	1544 bp upstream
Tssr25727	transcription start site region 25727	1511 bp upstream
Tssr25728	transcription start site region 25728	1495 bp upstream
Tssr25729	transcription start site region 25729	1465 bp upstream
Tssr25730	transcription start site region 25730	1404 bp upstream
Tssr25731	transcription start site region 25731	1347 bp upstream
Tssr25732	transcription start site region 25732	1235 bp upstream
Tssr25733	transcription start site region 25733	1137 bp upstream
Tssr25734	transcription start site region 25734	59 bp upstream
Tssr25735	transcription start site region 25735	15 bp upstream
Tssr25736	transcription start site region 25736	155 bp downstream
Tssr25737	transcription start site region 25737	191 bp downstream