rs29506777 SNP Detail

Summary

• ID
  rs29506777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAATCCGAA ATAGTCCCTG
  CCTCCAATTC CACTGTTTGA AGCCAATCTC CATATACTGT TGGGACGGAC TAACAAGATT
  AGCTCTCGAG AACTGTGGAC TTTCTGTTTG GGATGAAAAA AATTAACTAT AACAATTAGG
  CCAATTATTT TCGTTTCGTT GAATTAAAAA ATAACACTGA GTATTGCTTT TTGGCTTGGA
  Y
  GGAAAATCTT GGGGTGCAGC AGCATTCTGT GGATAGAAGC TTTGCTTTCT GCCTCCCATG
  GGACGAGGTG TGCCCATATC TCAGGGCGAC CTCCCTGTAG TCCCCCTCCC ACTTTACAGC
  ACCTCATTCC ACGCGGCCCG TGGCGATGGA GGTTTATTCT GCCTGGAACC TCTTTTCCTG
  GGCGAGTAGA GGCTTCTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45323168	mCV23507061	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148318898	ENSMUSSNP2416033	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320619381	CHEV_2_172374125	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29506777					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390545 () rs orientation: forward

Symbol	Name	Function Class
Rr571697	regulatory region 571697	478 bp proximal
Rr571698	regulatory region 571698	1667 bp proximal
Rr571699	regulatory region 571699	1983 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	956 bp upstream
Tssr21967	transcription start site region 21967	1011 bp upstream